Fix clean template.

templates/common/clean.sh

@@ -5,19 +5,18 @@ WORKDIR=%HPCROOTDIR%
 STARTDATE=%SDATE%
 MEMBER=%MEMBER%
 FILES_TO_CLEAN='%simulation.FILES_TO_CLEAN%'
-
 echo "${FILES_TO_CLEAN}"
 
 # Define run directory
 RUNDIR=${WORKDIR}/${STARTDATE}/${MEMBER}
 
-# Copy the output files
-for file_name in "${FILES_TO_CLEAN}"; do
-  echo "Removing:" ${file_name}
-  rm "${RUNDIR}/${file_name}"
-done
+cd ${RUNDIR} || exit
+# Remove the files in the run directory
+rm ${FILES_TO_CLEAN}
+
 
-# Remove the output files from the remote machine
+# Remove the files in the remote output directory
 OUTPUT_DIR=${WORKDIR}/output/${STARTDATE}/${MEMBER}
 
-rm ${OUTPUT_DIR}/*
+cd ${OUTPUT_DIR} || exit
+rm ${FILES_TO_CLEAN}