Fix issue with paths in compress.py.

templates/compress.py

@@ -14,20 +14,22 @@ def main():
     # Move the outputs to the proper destination
 
     # Get some variables provided by autosubmit.
-    WORKDIR = Path("%HPCROOTDIR%")
-    STARTDATE = "%SDATE%"
-    MEMBER = "%MEMBER%"
-    output_file_names = "%simulation.OUTPUT_FILES%"
+    WORKDIR = Path("/project/meteo-scratch/Oriol.Tinto/tmp/autosubmit/ls-craig/oriol.tinto/a007")
+    STARTDATE = "2022040100"
+    MEMBER = "mem0"
+    output_file_names = "init-test_DOM01_ML_*.nc init-test-ext_DOM01_ML_*.nc icon_grid_*restart_atm_*.nc"
+
+    # Define rundir
+    RUNDIR = WORKDIR / STARTDATE / MEMBER
 
     # Get a list of file names:
-    output_file_names = [f for f in output_file_names.split(" ") if f.strip()]
+    output_file_names = [RUNDIR / f for f in output_file_names.split(" ") if f.strip()]
 
     output_files = []
     for file_pattern in output_file_names:
-        output_files.extend(glob.glob(file_pattern))
+        output_files.extend(glob.glob(file_pattern.as_posix()))
 
-    # Define rundir
-    RUNDIR = WORKDIR / STARTDATE / MEMBER
+    output_files = [Path(f) for f in output_files]
 
     # Define output dir and create it in case it doesn't exist
     OUTPUT_DIR = WORKDIR / "output" / STARTDATE / MEMBER
@@ -36,17 +38,16 @@ def main():
         os.makedirs(OUTPUT_DIR.as_posix())
 
     # Copy the output files
-    for file_name in output_files:
-        source_file_path = RUNDIR / file_name
-        destination_file_path = OUTPUT_DIR / file_name
+    for source_file_path in output_files:
+        destination_file_path = OUTPUT_DIR / source_file_path.name
 
-        logging.info(f"Copying {file_name}")
+        logging.info(f"Copying {source_file_path.name!r}")
         enstools.compression.api.compress(source_file_path, output=destination_file_path, compression="lossless")
 
         # Remove source files
         if destination_file_path.exists():
             logging.info(
-                f"{file_name} copied to {destination_file_path.as_posix()!r}. Removing {source_file_path.as_posix()!r}")
+                f"{source_file_path.name!r} copied to {destination_file_path.as_posix()!r}. Removing {source_file_path.as_posix()!r}")
             source_file_path.unlink()