From 7f8c7c4f7c4cea0ce8750fd1f22b6f8fdcfeabcf Mon Sep 17 00:00:00 2001
From: "Takumi.Matsunobu" <Takumi.Matsunobu@physik.uni-muenchen.de>
Date: Wed, 19 Jul 2023 14:13:08 +0200
Subject: [PATCH] Tweaks for removing SIGSEGV
---
conf/common/build.yml | 4 ++++
namelists/real-from-d2-ana/icon_atmosphere.namelist | 2 +-
templates/common/run_icon.sh | 5 ++++-
templates/real-from-d2-ana/prepare_experiment.sh | 2 +-
templates/real-from-d2-ana/prepare_lbc_remote.sh | 2 +-
templates/real-from-d2-ana/prepare_namelist.py | 4 +++-
6 files changed, 14 insertions(+), 5 deletions(-)
diff --git a/conf/common/build.yml b/conf/common/build.yml
index baa307e..e0a3753 100644
--- a/conf/common/build.yml
+++ b/conf/common/build.yml
@@ -31,6 +31,10 @@ icon:
load_cmd: build_cmd
version: master # The latest release at the moment of creating this file was 2.6.5-nwp0
+ launch_cmd: "srun"
+ # for LRZ
+ #launch_cmd: "-K --mpi=pmi2 --cpu-freq=HighM1 --kill-on-bad-exit=1 --cpu_bind=verbose,cores --distribution=block:block"
+
dwdicontools:
build_cmd: "dwd-icon-tools% %SPACK.COMPILER%"
load_cmd: build_cmd
diff --git a/namelists/real-from-d2-ana/icon_atmosphere.namelist b/namelists/real-from-d2-ana/icon_atmosphere.namelist
index 0d9bc93..e72ebc9 100644
--- a/namelists/real-from-d2-ana/icon_atmosphere.namelist
+++ b/namelists/real-from-d2-ana/icon_atmosphere.namelist
@@ -132,7 +132,7 @@
vmr_cfc12 = 532.e-12
direct_albedo_water = 3
albedo_whitecap = 1
- ecrad_data_path = "/hpc/uhome/adlozar/icon/externals/ecrad/data"
+ ecrad_data_path = "/dss/dsskcsfs01/pn34ca/pn34ca-dss-0009/ICON/data/externals/ecrad"
ecrad_llw_cloud_scat = .false.
ecrad_iliquid_scat = 0
ecrad_iice_scat = 0
diff --git a/templates/common/run_icon.sh b/templates/common/run_icon.sh
index a72b0c8..44741da 100644
--- a/templates/common/run_icon.sh
+++ b/templates/common/run_icon.sh
@@ -32,5 +32,8 @@ source ${WORKDIR}/eccodes_defs.env
# Increase stack size limit
ulimit -s unlimited
+# Get proper load command.
+ICON_LAUNCH_CMD="%ICON.LAUNCH_CMD%"
+
# Run icon
-srun icon
+${ICON_LAUNCH_CMD} icon
diff --git a/templates/real-from-d2-ana/prepare_experiment.sh b/templates/real-from-d2-ana/prepare_experiment.sh
index 76ee38e..2774e08 100644
--- a/templates/real-from-d2-ana/prepare_experiment.sh
+++ b/templates/real-from-d2-ana/prepare_experiment.sh
@@ -49,4 +49,4 @@ cp "%simulation.namelist_paths.ana_map%" .
cp "%simulation.namelist_paths.lbc_map%" .
# Change permissions to read only.
-chmod 440 ./*
\ No newline at end of file
+#chmod 440 ./*
\ No newline at end of file
diff --git a/templates/real-from-d2-ana/prepare_lbc_remote.sh b/templates/real-from-d2-ana/prepare_lbc_remote.sh
index 31e473d..2da0d2c 100644
--- a/templates/real-from-d2-ana/prepare_lbc_remote.sh
+++ b/templates/real-from-d2-ana/prepare_lbc_remote.sh
@@ -118,7 +118,7 @@ if [ "${LBC_DATA_IS_LOCAL}" != "True" ]; then
#cp "${LBC_SOURCE}" "${LBC_FILE}"
# Change permissions to read only.
- chmod 440 ${MEMBER_DIR}/latbc_*.grib
+ #chmod 440 ${MEMBER_DIR}/latbc_*.grib
fi
\ No newline at end of file
diff --git a/templates/real-from-d2-ana/prepare_namelist.py b/templates/real-from-d2-ana/prepare_namelist.py
index bd69447..40172d0 100644
--- a/templates/real-from-d2-ana/prepare_namelist.py
+++ b/templates/real-from-d2-ana/prepare_namelist.py
@@ -90,7 +90,9 @@ atmosphere_namelist_replacements = {
# -> cloud_cosmo5 (mu=1/3): 0 (REF), 1, 2, 4, 8
# -> cloud_nue1mue1 (mu=1): 1 (REF), 2, 4, 8
},
-
+ # "radiation_nml": {
+ # "ecrad_data_path:": "",
+ # },
}
master_namelist_replacements = {
--
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