From 06ee27742c566119c9acf14f55a1788e2d12ba6c Mon Sep 17 00:00:00 2001
From: Nikolai Hartmann <Nikolai.Hartmann@physik.uni-muenchen.de>
Date: Fri, 3 Aug 2018 15:30:32 +0200
Subject: [PATCH] fix orientation of profile hist
---
plotting.py | 5 +++--
scripts/plot_single_neuron.py | 1 +
2 files changed, 4 insertions(+), 2 deletions(-)
diff --git a/plotting.py b/plotting.py
index 6e83a8f..f579362 100644
--- a/plotting.py
+++ b/plotting.py
@@ -223,7 +223,7 @@ def plot_hist_2D(plotname, xedges, yedges, hist, varx_label=None, vary_label=Non
extraopts = dict()
if log:
- extraopts.update(norm=matplotlib.colors.LogNorm(vmin=1, vmax=np.max(hist)))
+ extraopts.update(norm=matplotlib.colors.LogNorm(vmin=np.min(hist[hist>0]), vmax=np.max(hist)))
ax.set_facecolor("black")
pcm = ax.pcolormesh(X, Y, hist, cmap="inferno", **extraopts)
@@ -297,7 +297,7 @@ def plot_profile_2D(plotname, valsx, valsy, scores,
hist = []
for binindex_x in range(1, len(xedges)+1):
line = []
- for binindex_y in range(1, len(xedges)+1):
+ for binindex_y in range(1, len(yedges)+1):
binindices_xy = (binindices_x == binindex_x) & (binindices_y == binindex_y)
scores_bin = scores[binindices_xy]
if len(scores_bin) > 0:
@@ -310,6 +310,7 @@ def plot_profile_2D(plotname, valsx, valsy, scores,
line.append(prof_score)
hist.append(line)
hist = np.array(hist)
+ hist = hist.T # had a list of columns - needs to be list of rows
plot_hist_2D(plotname, xedges, yedges, hist, **kwargs)
diff --git a/scripts/plot_single_neuron.py b/scripts/plot_single_neuron.py
index bb638d8..6f12819 100755
--- a/scripts/plot_single_neuron.py
+++ b/scripts/plot_single_neuron.py
@@ -132,4 +132,5 @@ elif args.mode.startswith("hist"):
ymin=vary_range[0], ymax=vary_range[1], nbinsy=vary_range[2],
weights=weights,
varx_label=varx_label, vary_label=vary_label,
+ log=args.log,
)
--
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